Transcript: lnc-TXNDC16-4:1

Basic information

LNCipedia transcript ID: lnc-TXNDC16-4:1 
LNCipedia gene ID: lnc-TXNDC16-4
Location (hg19): chr14:52789141-52794420
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5280 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000021084.1|FTMT25400002656.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.2337 non-coding 
CPAT coding probability 6.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TXNDC16-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TXNDC16-4:1
5.0 lnc-TXNDC16-4:1
5.1 lnc-RTN1-89:1
5.2 lnc-TXNDC16-4:1