Transcript: lnc-TYW1-12:1

Basic information

LNCipedia transcript ID: lnc-TYW1-12:1 
LNCipedia gene ID: lnc-TYW1-12
Ensembl Gene ID: ENSG00000225209
Ensembl Transcript ID: ENST00000444745
RefSeq ID: NR_120514
Location (hg19): chr7:67485240-67497677
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00013018; ENST00000444745; ENST00000444745.1; RP11-358M3.1-001; OTTHUMT00000344640.1; NONHSAT121291; NR_120514; NR_120514.1
Alternative gene names: XLOC_006139; linc-AUTS2-4; ENSG00000225209; RP11-358M3.1; ENSG00000225209.1; OTTHUMG00000156569.1; AC092637.1; LOC102723427


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.3923 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TYW1-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAG3L4-2:1
3.1 lnc-STAG3L4-2:1
4.0 lnc-STAG3L4-2:1
4.1 lnc-STAG3L4-2:1
5.0 lnc-STAG3L4-2:1
5.1 lnc-TPST1-52:1
5.2 lnc-TYW1-12:1