Transcript: lnc-TYW1-14:2

Basic information

LNCipedia transcript ID: lnc-TYW1-14:2 
LNCipedia gene ID: lnc-TYW1-14
Location (hg19): chr7:67582818-67584196
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 705 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00013019; ENST00000424888; ENST00000424888.1; RP5-945F2.2-001; OTTHUMT00000344661.1; NONHSAT121296
Alternative gene names: XLOC_006140; linc-AUTS2-3; ENSG00000236531; RP5-945F2.2; ENSG00000236531.1; OTTHUMG00000156583.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.925 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TYW1-14:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAG3L4-3:1
3.1 lnc-STAG3L4-3:1
4.0 lnc-STAG3L4-3:1
4.1 lnc-STAG3L4-3:1
5.0 lnc-STAG3L4-3:1
5.1 lnc-TPST1-56:2
5.2 lnc-TYW1-14:2