Transcript: lnc-U2SURP-3:6

Basic information

LNCipedia transcript ID: lnc-U2SURP-3:6 
LNCipedia gene ID: lnc-U2SURP-3
Location (hg19): chr3:142656292-142660299
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 499 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000465194.3; RP11-372E1.4-004; OTTHUMT00000354507.3
Alternative gene names: ENSG00000243818.3; RP11-372E1.4; OTTHUMG00000159310.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.1048 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-U2SURP-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-U2SURP-3:6
4.0 lnc-U2SURP-3:6
4.1 lnc-U2SURP-3:6
5.0 lnc-U2SURP-3:6
5.1 lnc-PXYLP1-24:14
5.2 lnc-U2SURP-3:6