Transcript: lnc-U2SURP-3:9

Basic information

LNCipedia transcript ID: lnc-U2SURP-3:9 
LNCipedia gene ID: lnc-U2SURP-3
RefSeq ID: NR_038455
Location (hg19): chr3:142645517-142661378
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1827 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT092491; NR_038455; NR_038455.1
Alternative gene names: LOC100507389


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.9276 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-U2SURP-3:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-U2SURP-3:9
4.0 lnc-U2SURP-3:9
4.1 lnc-U2SURP-3:9
5.0 lnc-U2SURP-3:9
5.1 lnc-PXYLP1-24:3
5.2 lnc-U2SURP-3:9