Transcript: lnc-UBAP2-6:3

Basic information

LNCipedia transcript ID: lnc-UBAP2-6:3 
LNCipedia gene ID: lnc-UBAP2-6
Location (hg19): chr9:33785948-33799911
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 478 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000454429.1; RP11-133O22.6-001; OTTHUMT00000001064.1
Alternative gene names: ENSG00000235481.1; RP11-133O22.6; OTTHUMG00000000421.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.4715 non-coding 
CPAT coding probability 4.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBAP2-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBAP2-2:1
4.0 LINC01251:3
4.1 LINC01251:3
5.0 LINC01251:3
5.1 lnc-CD72-53:3
5.2 lnc-UBAP2-6:3