Transcript: lnc-UBE2B-1:1

Basic information

LNCipedia transcript ID: lnc-UBE2B-1:1 
LNCipedia gene ID: lnc-UBE2B-1
Ensembl Gene ID: ENSG00000248559
Ensembl Transcript ID: ENST00000503470
Location (hg19): chr5:133735186-133737612
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009512; ENST00000503470.1; RP11-215P8.3-001; OTTHUMT00000371574.1; NONHSAT103850
Alternative gene names: XLOC_004557; linc-PHF15-3; ENSG00000248559.1; RP11-215P8.3; OTTHUMG00000163068.1; AC109454.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.0216 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBE2B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2B-1:1
3.1 lnc-UBE2B-1:1
4.0 lnc-UBE2B-1:1
4.1 lnc-UBE2B-1:1
5.0 lnc-UBE2B-1:1
5.1 lnc-PDLIM4-47:1
5.2 lnc-UBE2B-1:1