Transcript: lnc-UBE2N-3:1

Basic information

LNCipedia transcript ID: lnc-UBE2N-3:1 
LNCipedia gene ID: lnc-UBE2N-3
Ensembl Gene ID: ENSG00000258274
Ensembl Transcript ID: ENST00000550287
RefSeq ID: NR_110092
Location (hg19): chr12:94101567-94131599
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1587 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000507913; ENST00000550287.1; RP11-887P2.5-001; OTTHUMT00000408519.1; NONHSAT029961; NR_110092; NR_110092.1
Alternative gene names: ENSG00000249585; ENSG00000258274.1; RP11-887P2.5; OTTHUMG00000170323.1; AC012085.2; LOC101928731


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0043 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBE2N-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2N-2:1
3.1 lnc-UBE2N-3:1
4.0 lnc-UBE2N-3:1
4.1 lnc-UBE2N-3:1
5.0 lnc-UBE2N-3:1
5.1 lnc-EEA1-21:1
5.2 lnc-UBE2N-3:1