Transcript: lnc-UBE2R2-1:1

Basic information

LNCipedia transcript ID: lnc-UBE2R2-1:1 
LNCipedia gene ID: lnc-UBE2R2-1
Location (hg19): chr9:33983643-33984662
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 478 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000425532.1; RP11-176F3.8-001; OTTHUMT00000001066.1; NONHSAT130812
Alternative gene names: ENSG00000235983.1; RP11-176F3.8; OTTHUMG00000000423.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.6159 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBE2R2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2R2-1:1
4.0 lnc-UBE2R2-1:1
4.1 lnc-UBE2R2-1:1
5.0 lnc-UBE2R2-1:1
5.1 lnc-RECK-50:1
5.2 lnc-UBE2R2-1:1