Transcript: lnc-UBE3A-2:1

Basic information

LNCipedia transcript ID: lnc-UBE3A-2:1 
LNCipedia gene ID: lnc-UBE3A-2
Ensembl Gene ID: ENSG00000257647
Ensembl Transcript ID: ENST00000546615
Location (hg19): chr15:25272883-25277194
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546615.1; RP11-701H24.3-001; OTTHUMT00000408285.1; NONHSAT040994
Alternative gene names: ENSG00000257647.1; RP11-701H24.3; OTTHUMG00000170275.1; AC124312.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.6743 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBE3A-2:1 no no no no

Available literature

  1. Sjöstedt (2015), Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE3A-2:1
4.0 lnc-UBE3A-2:1
4.1 lnc-UBE3A-2:1
5.0 lnc-UBE3A-2:1
5.1 lnc-ATP10A-12:1
5.2 lnc-UBE3A-2:1