Transcript: lnc-UBLCP1-2:1

Basic information

LNCipedia transcript ID: lnc-UBLCP1-2:1 
LNCipedia gene ID: lnc-UBLCP1-2
Location (hg19): chr5:158737941-158760011
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 632 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000521472; ENST00000521472.1; AC008697.1-002; OTTHUMT00000374078.1; NONHSAT104823; ENST00000521472.5
Alternative gene names: ENSG00000249738; AC008697.1; ENSG00000249738.2; OTTHUMG00000163541.1; ENSG00000249738.7; ENSG00000249738.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.8418 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBLCP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBLCP1-2:1
3.1 lnc-UBLCP1-2:1
4.0 lnc-UBLCP1-2:1
4.1 lnc-UBLCP1-2:1
5.0 lnc-UBLCP1-2:1
5.1 lnc-MRPL22-39:7
5.2 lnc-UBLCP1-2:1