Transcript: lnc-UBLCP1-2:2

Basic information

LNCipedia transcript ID: lnc-UBLCP1-2:2 
LNCipedia gene ID: lnc-UBLCP1-2
Ensembl Gene ID: ENSG00000249738
Ensembl Transcript ID: ENST00000515337
RefSeq ID: NR_037889
Location (hg19): chr5:158758526-158789842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1580 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000515337; ENST00000515337.1; AC008697.1-001; OTTHUMT00000374079.1; NONHSAT104825; NR_037889; NR_037889.1
Alternative gene names: ENSG00000249738; AC008697.1; ENSG00000249738.2; OTTHUMG00000163541.1; ENSG00000249738.7; ENSG00000249738.8; ENSG00000249738.9; AC008691.1; LOC285626


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.6878 non-coding 
CPAT coding probability 12.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBLCP1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBLCP1-2:2
3.1 lnc-UBLCP1-2:2
4.0 lnc-UBLCP1-2:2
4.1 lnc-UBLCP1-2:2
5.0 lnc-UBLCP1-2:2
5.1 lnc-MRPL22-39:9
5.2 lnc-UBLCP1-2:2