Transcript: lnc-UBLCP1-6:1

Basic information

LNCipedia transcript ID: lnc-UBLCP1-6:1 
LNCipedia gene ID: lnc-UBLCP1-6
Ensembl Gene ID: ENSG00000253456
Ensembl Transcript ID: ENST00000518425
Location (hg19): chr5:158412814-158414207
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 542 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518425.1; CTD-2363C16.2-001; OTTHUMT00000373929.1; NONHSAT104809
Alternative gene names: ENSG00000253456.1; CTD-2363C16.2; OTTHUMG00000163514.1; AC136424.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -261.0141 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBLCP1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBLCP1-6:1
4.0 lnc-UBLCP1-6:1
4.1 lnc-UBLCP1-6:1
5.0 lnc-UBLCP1-6:1
5.1 lnc-MRPL22-33:1
5.2 lnc-UBLCP1-6:1