Transcript: lnc-UBR2-1:3

Basic information

LNCipedia transcript ID: lnc-UBR2-1:3 
LNCipedia gene ID: lnc-UBR2-1
Location (hg19): chr6:42420213-42423732
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 354 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011815; NONHSAT112796
Alternative gene names: XLOC_005289; linc-UBR2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.957 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBR2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBR2-2:1
3.1 lnc-UBR2-2:1
4.0 lnc-UBR2-1:3
4.1 lnc-UBR2-1:3
5.0 lnc-UBR2-1:3
5.1 lnc-TREML4-23:1
5.2 lnc-UBR2-1:3