Transcript: lnc-UBR2-4:3

Basic information

LNCipedia transcript ID: lnc-UBR2-4:3 
LNCipedia gene ID: lnc-UBR2-4
Location (hg19): chr6:42756998-42759057
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1730 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000440880.1; RP11-501I18.2-001; OTTHUMT00000040561.1; NONHSAT112845
Alternative gene names: ENSG00000236163.1; RP11-501I18.2; OTTHUMG00000014705.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.2561 non-coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBR2-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPL7L1-1:1
4.0 lnc-UBR2-4:3
4.1 lnc-UBR2-4:3
5.0 lnc-UBR2-4:3
5.1 lnc-TREML4-28:4
5.2 lnc-UBR2-4:3