Transcript: lnc-UBXN4-3:1

Basic information

LNCipedia transcript ID: lnc-UBXN4-3:1 
LNCipedia gene ID: lnc-UBXN4-3
Ensembl Gene ID: ENSG00000237262
Ensembl Transcript ID: ENST00000448672
Location (hg19): chr2:136835462-136836083
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003008; ENST00000448672; ENST00000448672.1; AC068492.1-001; OTTHUMT00000331712.1; NONHSAT074631
Alternative gene names: XLOC_001683; linc-THSD7B-3; ENSG00000237262; AC068492.1; ENSG00000237262.1; OTTHUMG00000153580.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.9935 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UBXN4-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBXN4-2:1
3.1 lnc-UBXN4-3:1
4.0 lnc-UBXN4-3:1
4.1 lnc-UBXN4-3:1
5.0 lnc-UBXN4-3:1
5.1 lnc-GPR17-111:1
5.2 lnc-UBXN4-3:1