Transcript: lnc-UCHL3-2:1

Basic information

LNCipedia transcript ID: lnc-UCHL3-2:1 
LNCipedia gene ID: lnc-UCHL3-2
Location (hg19): chr13:75949647-75950209
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000440094.1; TBC1D4-AS1-001; OTTHUMT00000045282.1; NONHSAT034353
Alternative gene names: ENSG00000225203.1; TBC1D4-AS1; OTTHUMG00000017087.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -289.1165 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCHL3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UCHL3-2:1
4.0 lnc-UCHL3-2:1
4.1 lnc-UCHL3-2:1
5.0 lnc-UCHL3-2:1
5.1 lnc-COL4A2-244:1
5.2 lnc-UCHL3-2:1