Transcript: lnc-UCHL3-5:13

Basic information

LNCipedia transcript ID: lnc-UCHL3-5:13 
HGNC Gene Symbol: lnc-UCHL3-5    
HGNC Full Gene Name: long intergenic non-protein coding RNA 381
Ensembl Gene ID: ENSG00000226240
Ensembl Transcript ID: ENST00000423629
RefSeq ID: NR_047005
Location (hg19): chr13:74993310-75009296
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 727 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000423629.1; LINC00381-001; OTTHUMT00000045275.1; NONHSAT034327; NR_047005; NR_047005.1
Alternative gene names: ENSG00000226240.1; LINC00381; OTTHUMG00000017081.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.093 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCHL3-5:13 no no no no

Available literature

  1. Parolo (2015), Characterization of the biological processes shaping the genetic structure of the Italian population., BMC Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UCHL3-8:1
4.0 lnc-UCHL3-5:13
4.1 lnc-UCHL3-5:13
5.0 lnc-UCHL3-5:13
5.1 lnc-COL4A2-250:1
5.2 lnc-UCHL3-5:13