Transcript: lnc-UCHL3-5:17

Basic information

LNCipedia transcript ID: lnc-UCHL3-5:17 
LNCipedia gene ID: lnc-UCHL3-5
Location (hg19): chr13:75126984-75131242
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2123 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022203; NONHSAT034334
Alternative gene names: XLOC_010429; linc-UCHL3-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.6714 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCHL3-5:17 no no no no

Available literature

  1. Parolo (2015), Characterization of the biological processes shaping the genetic structure of the Italian population., BMC Genet.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UCHL3-5:3
3.1 lnc-UCHL3-6:3
4.0 lnc-UCHL3-5:17
4.1 lnc-UCHL3-5:17
5.0 lnc-UCHL3-5:17
5.1 lnc-COL4A2-250:12
5.2 lnc-UCHL3-5:17