Transcript: lnc-UCK2-2:1

Basic information

LNCipedia transcript ID: lnc-UCK2-2:1 
LNCipedia gene ID: lnc-UCK2-2
Ensembl Gene ID: ENSG00000203307
Ensembl Transcript ID: ENST00000366136
Location (hg19): chr1:166050420-166056720
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 594 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366136.2; RP11-375H19.2-001; OTTHUMT00000343104.1; NONHSAT007349
Alternative gene names: ENSG00000203307.2; RP11-375H19.2; OTTHUMG00000156135.1; AL626787.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.7076 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UCK2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UCK2-2:1
4.0 lnc-UCK2-2:1
4.1 lnc-UCK2-2:1
5.0 lnc-UCK2-2:1
5.1 lnc-MAEL-21:2
5.2 lnc-UCK2-2:1