Transcript: lnc-UNCX-3:13

Basic information

LNCipedia transcript ID: lnc-UNCX-3:13 
LNCipedia gene ID: lnc-UNCX-3
Ensembl Gene ID: ENSG00000229043
Ensembl Transcript ID: ENST00000422230
Location (hg19): chr7:1200130-1204211
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422230.1; AC091729.9-002; OTTHUMT00000322839.1; NONHSAT118708
Alternative gene names: ENSG00000229043.1; AC091729.9; OTTHUMG00000151480.1; ENSG00000229043.2; AC091729.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.337 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UNCX-3:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPER-3:3
4.0 lnc-UNCX-3:13
4.1 lnc-UNCX-3:13
5.0 lnc-UNCX-3:13
5.1 lnc-GPER1-8:25
5.2 lnc-UNCX-3:13