Transcript: lnc-UPF3A-1:1

Basic information

LNCipedia transcript ID: lnc-UPF3A-1:1 
LNCipedia gene ID: lnc-UPF3A-1
Location (hg19): chr13:115072121-115072541
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT035427
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.6033 non-coding 
CPAT coding probability 21.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UPF3A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UPF3A-1:1
4.0 lnc-UPF3A-1:1
4.1 lnc-UPF3A-1:1
5.0 lnc-UPF3A-1:1
5.1 lnc-CHAMP1-1:1
5.2 lnc-UPF3A-1:1