Transcript: lnc-UPP2-2:3

Basic information

LNCipedia transcript ID: lnc-UPP2-2:3 
LNCipedia gene ID: lnc-UPP2-2
Ensembl Gene ID: ENSG00000270557
Ensembl Transcript ID: ENST00000604340
Location (hg19): chr2:158734195-158735077
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 883 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147120; ENST00000604340.1
Alternative gene names: ENSG00000270557.1; RP11-546J1.1; AC013731.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.692 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UPP2-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UPP2-2:3
4.0 lnc-UPP2-2:3
4.1 lnc-UPP2-2:3
5.0 lnc-UPP2-2:3
5.1 lnc-UPP2-2:3
5.2 lnc-UPP2-2:3