Transcript: lnc-UQCRFS1-3:28

Basic information

LNCipedia transcript ID: lnc-UQCRFS1-3:28 
LNCipedia gene ID: lnc-UQCRFS1-3
Ensembl Gene ID: ENSG00000260725
Ensembl Transcript ID: ENST00000567877
Location (hg19): chr19:28909390-28920397
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1570 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567877.1; AC005307.1-001; OTTHUMT00000431036.1; NONHSAT064037
Alternative gene names: ENSG00000260725.1; AC005307.1; OTTHUMG00000175757.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.7677 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UQCRFS1-3:28 no no no no

Available literature

  1. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-4:1
4.0 lnc-UQCRFS1-4:1
4.1 lnc-UQCRFS1-3:28
5.0 lnc-UQCRFS1-3:28
5.1 lnc-SCGB2B2-120:28
5.2 lnc-UQCRFS1-3:28