Transcript: lnc-UQCRHL-3:1

Basic information

LNCipedia transcript ID: lnc-UQCRHL-3:1 
LNCipedia gene ID: lnc-UQCRHL-3
Ensembl Gene ID: ENSG00000237938
Ensembl Transcript ID: ENST00000453804
Location (hg19): chr1:16049214-16063391
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 645 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453804.1; RP11-288I21.1-001; OTTHUMT00000008470.1; NONHSAT001056
Alternative gene names: ENSG00000237938.1; RP11-288I21.1; OTTHUMG00000003064.1; ENSG00000237938.5; AL450998.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 72.6334 coding 
CPAT coding probability 54.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UQCRHL-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGMAT-2:1
4.0 lnc-AGMAT-2:1
4.1 lnc-AGMAT-2:1
5.0 lnc-AGMAT-2:1
5.1 lnc-LRRC38-22:1
5.2 lnc-UQCRHL-3:1