Transcript: lnc-USHBP1-1:1

Basic information

LNCipedia transcript ID: lnc-USHBP1-1:1 
LNCipedia gene ID: lnc-USHBP1-1
Ensembl Gene ID: ENSG00000269815
Ensembl Transcript ID: ENST00000594077
Location (hg19): chr19:17407005-17407504
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 500 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT062854; ENST00000594077.1
Alternative gene names: ENSG00000269815.1; CTD-2278I10.4; AC010463.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.7026 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USHBP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANO8-1:1
4.0 lnc-ANO8-1:1
4.1 lnc-ANO8-1:1
5.0 lnc-ANO8-1:1
5.1 lnc-PALM3-97:1
5.2 lnc-USHBP1-1:1