Transcript: lnc-USP16-5:1

Basic information

LNCipedia transcript ID: lnc-USP16-5:1 
LNCipedia gene ID: lnc-USP16-5
Ensembl Gene ID: ENSG00000234083
Ensembl Transcript ID: ENST00000433344
Location (hg19): chr21:29327240-29357614
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028826; ENST00000433344; ENST00000433344.1; AJ006995.3-001; OTTHUMT00000157552.1; NONHSAT081585
Alternative gene names: XLOC_013898; linc-USP16-7; ENSG00000234083; AJ006995.3; ENSG00000234083.1; OTTHUMG00000074159.1; AJ006995.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.3879 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP16-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-5:1
3.1 lnc-USP16-5:1
4.0 lnc-USP16-5:1
4.1 lnc-USP16-5:1
5.0 lnc-USP16-5:1
5.1 lnc-OLIG1-48:1
5.2 lnc-USP16-5:1