Transcript: lnc-USP16-9:2

Basic information

LNCipedia transcript ID: lnc-USP16-9:2 
LNCipedia gene ID: lnc-USP16-9
Location (hg19): chr21:30375175-30375668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055828.1|FTMT28400001449.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.1255 non-coding 
CPAT coding probability 7.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP16-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-USP16-9:2
5.0 lnc-USP16-9:2
5.1 lnc-OLIG1-41:1
5.2 lnc-USP16-9:2