Transcript: lnc-USP20-1:1

Basic information

LNCipedia transcript ID: lnc-USP20-1:1 
LNCipedia gene ID: lnc-USP20-1
Location (hg19): chr9:132677198-132677715
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 475 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000447586.1; RP11-409K20.8-001; OTTHUMT00000054628.1; NONHSAT135126
Alternative gene names: ENSG00000225425.1; RP11-409K20.8; OTTHUMG00000020799.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.1735 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP20-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP20-1:1
4.0 lnc-USP20-1:1
4.1 lnc-USP20-1:1
5.0 lnc-USP20-1:1
5.1 lnc-PTPA-51:1
5.2 lnc-USP20-1:1