Transcript: lnc-USP35-2:1

Basic information

LNCipedia transcript ID: lnc-USP35-2:1 
LNCipedia gene ID: lnc-USP35-2
Ensembl Gene ID: ENSG00000254649
Ensembl Transcript ID: ENST00000527030
Location (hg19): chr11:78099107-78103451
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 365 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527030.1; RP11-452H21.2-001; OTTHUMT00000391125.1; NONHSAT023291
Alternative gene names: ENSG00000254649.1; RP11-452H21.2; OTTHUMG00000166696.1; AP003086.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.8534 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP35-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP35-2:1
4.0 lnc-USP35-2:1
4.1 lnc-USP35-2:1
5.0 lnc-USP35-2:1
5.1 lnc-DDIAS-43:1
5.2 lnc-USP35-2:1