Transcript: lnc-USP42-1:2

Basic information

LNCipedia transcript ID: lnc-USP42-1:2 
LNCipedia gene ID: lnc-USP42-1
Ensembl Gene ID: ENSG00000231704
Ensembl Transcript ID: ENST00000436915
Location (hg19): chr7:6120734-6124887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012943; ENST00000436915; ENST00000436915.1; AC004895.4-002; OTTHUMT00000324257.1; NONHSAT118973; ENST00000436915.5
Alternative gene names: XLOC_005979; linc-USP42; ENSG00000231704; AC004895.4; ENSG00000231704.1; OTTHUMG00000151887.1; ENSG00000231704.5; AC004895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -220.8043 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP42-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP42-1:2
3.1 lnc-USP42-1:2
4.0 lnc-USP42-1:2
4.1 lnc-USP42-1:2
5.0 lnc-USP42-1:2
5.1 lnc-SLC29A4-18:2
5.2 lnc-USP42-1:2