Transcript: lnc-USP6NL-7:4

Basic information

LNCipedia transcript ID: lnc-USP6NL-7:4 
LNCipedia gene ID: lnc-USP6NL-7
Location (hg19): chr10:10826437-10836943
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00018437
Alternative gene names: XLOC_008730; linc-KIN-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -325.4913 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-7:4 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-3:4
3.1 lnc-C10orf31-7:4
4.0 lnc-C10orf31-7:4
4.1 lnc-C10orf31-7:4
5.0 lnc-C10orf31-7:4
5.1 lnc-KLF6-131:4
5.2 lnc-USP6NL-7:4