Transcript: lnc-USP6NL-7:9

Basic information

LNCipedia transcript ID: lnc-USP6NL-7:9 
LNCipedia gene ID: lnc-USP6NL-7
Location (hg19): chr10:10828603-10836930
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017928; ENST00000415590; ENST00000415590.1; SFTA1P-001; OTTHUMT00000046743.1; NONHSAT011376
Alternative gene names: XLOC_008730; linc-KIN-6; ENSG00000225383; SFTA1P; ENSG00000225383.1; OTTHUMG00000017660.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -325.4913 non-coding 
CPAT coding probability 3.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-7:9 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-3:7
3.1 lnc-C10orf31-7:7
4.0 lnc-C10orf31-7:7
4.1 lnc-C10orf31-7:7
5.0 lnc-C10orf31-7:7
5.1 lnc-KLF6-131:9
5.2 lnc-USP6NL-7:9