Transcript: lnc-USP6NL-8:11

Basic information

LNCipedia transcript ID: lnc-USP6NL-8:11 
LNCipedia gene ID: lnc-USP6NL-8
Location (hg19): chr10:10477912-10504248
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1251 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017926; ENST00000435106; ENST00000435106.1; RP11-271F18.2-001; OTTHUMT00000046741.1; NONHSAT011366
Alternative gene names: XLOC_008729; linc-KIN-7; ENSG00000227823; RP11-271F18.2; ENSG00000227823.1; OTTHUMG00000017658.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.1204 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP6NL-8:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf31-4:4
3.1 lnc-C10orf31-8:4
4.0 lnc-C10orf31-8:4
4.1 lnc-C10orf31-8:4
5.0 lnc-C10orf31-8:4
5.1 lnc-KLF6-130:11
5.2 lnc-USP6NL-8:11