Transcript: lnc-USP9X-1:1

Basic information

LNCipedia transcript ID: lnc-USP9X-1:1 
LNCipedia gene ID: lnc-USP9X-1
Ensembl Gene ID: ENSG00000223714
Ensembl Transcript ID: ENST00000452501
RefSeq ID: NR_135616
Location (hg19): chrX:41134992-41136031
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 835 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00016979; ENST00000452501; ENST00000452501.1; RP5-1172N10.2-001; OTTHUMT00000056247.1; NONHSAT136724; NR_135616.1
Alternative gene names: XLOC_007961; linc-DDX3X; ENSG00000223714; RP5-1172N10.2; ENSG00000223714.1; OTTHUMG00000021366.1; AL109797.1; LOC105373185


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2531 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP9X-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP9X-1:1
3.1 lnc-USP9X-1:1
4.0 lnc-USP9X-1:1
4.1 lnc-USP9X-1:1
5.0 lnc-USP9X-1:1
5.1 lnc-CHST7-59:1
5.2 lnc-USP9X-1:1