Transcript: lnc-UVSSA-1:7

Basic information

LNCipedia transcript ID: lnc-UVSSA-1:7 
LNCipedia gene ID: lnc-UVSSA-1
Ensembl Gene ID: ENSG00000272783
Ensembl Transcript ID: ENST00000608161
Location (hg19): chr4:1552011-1552299
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 289 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608161.1
Alternative gene names: ENSG00000272783.1; RP13-1016M1.2; AC147067.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.5751 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UVSSA-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CRIPAK-1:8
4.0 lnc-CRIPAK-1:8
4.1 lnc-CRIPAK-1:8
5.0 lnc-CRIPAK-1:8
5.1 lnc-GPR78-106:7
5.2 lnc-UVSSA-1:7