Transcript: lnc-UXS1-4:2

Basic information

LNCipedia transcript ID: lnc-UXS1-4:2 
LNCipedia gene ID: lnc-UXS1-4
Location (hg19): chr2:106470962-106473633
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 890 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT072994; ENST00000427050.2
Alternative gene names: ENSG00000235522.2; AC009505.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 92.2465 coding 
CPAT coding probability 34.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-UXS1-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UXS1-4:2
4.0 lnc-UXS1-4:2
4.1 lnc-UXS1-4:2
5.0 lnc-UXS1-4:2
5.1 lnc-AFF3-82:2
5.2 lnc-UXS1-4:2