Transcript: lnc-UXS1-4:4

Basic information

LNCipedia transcript ID: lnc-UXS1-4:4 
LNCipedia gene ID: lnc-UXS1-4
Ensembl Gene ID: ENSG00000235522
Ensembl Transcript ID: ENST00000596418
Location (hg19): chr2:106462990-106471696
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 655 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT072993; ENST00000596418.1
Alternative gene names: ENSG00000235522.2; AC009505.2; ENSG00000235522.6; AC010978.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.1259 non-coding 
CPAT coding probability 3.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UXS1-4:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UXS1-4:4
4.0 lnc-UXS1-4:4
4.1 lnc-UXS1-4:4
5.0 lnc-UXS1-4:4
5.1 lnc-AFF3-82:9
5.2 lnc-UXS1-4:4