Transcript: lnc-VAMP2-1:1

Basic information

LNCipedia transcript ID: lnc-VAMP2-1:1 
LNCipedia gene ID: lnc-VAMP2-1
Location (hg19): chr17:8064310-8068086
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2118 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_1403_chr17:8064309-8066813_whiteBloodCell
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 570.0132 coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VAMP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAMP2-1:1
4.0 lnc-VAMP2-1:1
4.1 lnc-VAMP2-1:1
5.0 lnc-VAMP2-1:1
5.1 lnc-PIK3R5-21:2
5.2 lnc-VAMP2-1:1