Transcript: lnc-VAMP4-4:3

Basic information

LNCipedia transcript ID: lnc-VAMP4-4:3 
LNCipedia gene ID: lnc-VAMP4-4
Location (hg19): chr1:171653836-171677859
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1016 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT007577
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.4758 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VAMP4-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAMP4-4:3
4.0 lnc-VAMP4-4:3
4.1 lnc-VAMP4-4:3
5.0 lnc-VAMP4-4:3
5.1 lnc-SH2D1B-100:3
5.2 lnc-VAMP4-4:3