Transcript: lnc-VCL-1:1

Basic information

LNCipedia transcript ID: lnc-VCL-1:1 
LNCipedia gene ID: lnc-VCL-1
Location (hg19): chr10:76185995-76186461
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 413 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000430363.1; RP11-506B4.5-001; OTTHUMT00000048759.1; NONHSAT014057
Alternative gene names: ENSG00000227539.1; RP11-506B4.5; OTTHUMG00000018502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.7478 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VCL-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VCL-1:1
4.0 lnc-VCL-1:1
4.1 lnc-VCL-1:1
5.0 lnc-VCL-1:1
5.1 lnc-MTRNR2L5-186:1
5.2 lnc-VCL-1:1