Transcript: lnc-VCX3A-1:1

Basic information

LNCipedia transcript ID: lnc-VCX3A-1:1 
LNCipedia gene ID: lnc-VCX3A-1
Ensembl Gene ID: ENSG00000231217
Ensembl Transcript ID: ENST00000438499
Location (hg19): chrX:6585906-6639585
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017036; ENST00000438499; ENST00000438499.1; RP11-1M18.1-001; OTTHUMT00000055680.1; NONHSAT136172
Alternative gene names: XLOC_008108; linc-VCX3A-2; ENSG00000231217; RP11-1M18.1; ENSG00000231217.1; OTTHUMG00000021098.1; AC097347.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.5416 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VCX3A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VCX3A-1:1
3.1 lnc-VCX3A-1:1
4.0 lnc-VCX3A-1:1
4.1 lnc-VCX3A-1:1
5.0 lnc-VCX3A-1:1
5.1 lnc-PCSK1N-239:1
5.2 lnc-VCX3A-1:1