Transcript: lnc-VGF-4:1

Basic information

LNCipedia transcript ID: lnc-VGF-4:1 
LNCipedia gene ID: lnc-VGF-4
Location (hg19): chr7:100770471-100773794
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3196 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000096638.1|MICT00000330024.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.9784 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VGF-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VGF-4:1
5.0 lnc-VGF-4:1
5.1 lnc-VGF-4:1
5.2 lnc-VGF-4:1