Transcript: lnc-VGLL3-8:1

Basic information

LNCipedia transcript ID: lnc-VGLL3-8:1 
LNCipedia gene ID: lnc-VGLL3-8
Location (hg19): chr3:86337081-86399240
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1735 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: l_2405_chr3:86337080-86399240_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.49 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VGLL3-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VGLL3-8:1
4.0 lnc-VGLL3-8:1
4.1 lnc-VGLL3-8:1
5.0 lnc-VGLL3-8:1
5.1 lnc-VGLL3-8:1
5.2 lnc-VGLL3-8:1