Transcript: lnc-VGLL4-9:1

Basic information

LNCipedia transcript ID: lnc-VGLL4-9:1 
LNCipedia gene ID: lnc-VGLL4-9
Location (hg19): chr3:11244156-11267604
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4602 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000063734.1|ENCT00000300200.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.4216 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VGLL4-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-VGLL4-9:1
5.0 lnc-VGLL4-9:1
5.1 lnc-SEC13-9:2
5.2 lnc-VGLL4-9:1