Transcript: lnc-VIP-4:2

Basic information

LNCipedia transcript ID: lnc-VIP-4:2 
LNCipedia gene ID: lnc-VIP-4
Location (hg19): chr6:153323976-153328094
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 289 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227627.1|FTMT22300008091.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -167.6555 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VIP-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL590867.1-4:2
5.0 lnc-AL590867.1-4:2
5.1 lnc-ESR1-9:2
5.2 lnc-VIP-4:2