Transcript: lnc-VN1R2-5:4

Basic information

LNCipedia transcript ID: lnc-VN1R2-5:4 
LNCipedia gene ID: lnc-VN1R2-5
Location (hg19): chr19:53700364-53714268
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT067646; ENST00000597550.1; ENST00000597550.5
Alternative gene names: ENSG00000269051.1; CTD-2245F17.3; ENSG00000269051.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.4538 non-coding 
CPAT coding probability 1.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VN1R2-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VN1R2-6:1
4.0 lnc-VN1R2-5:4
4.1 lnc-VN1R2-5:4
5.0 lnc-VN1R2-5:4
5.1 lnc-CACNG8-24:9
5.2 lnc-VN1R2-5:4