Transcript: lnc-VN1R2-5:5

Basic information

LNCipedia transcript ID: lnc-VN1R2-5:5 
LNCipedia gene ID: lnc-VN1R2-5
Location (hg19): chr19:53713920-53719357
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5438 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA685:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.1549 non-coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VN1R2-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-VN1R2-5:5
4.1 lnc-VN1R2-5:5
5.0 lnc-VN1R2-5:5
5.1 lnc-CACNG8-24:10
5.2 lnc-VN1R2-5:5