Transcript: lnc-VPS33B-6:3

Basic information

LNCipedia transcript ID: lnc-VPS33B-6:3 
LNCipedia gene ID: lnc-VPS33B-6
Location (hg19): chr15:91839618-91840351
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 345 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT048489
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.3896 non-coding 
CPAT coding probability 19.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS33B-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VPS33B-6:3
4.0 lnc-VPS33B-6:3
4.1 lnc-VPS33B-6:3
5.0 lnc-VPS33B-6:3
5.1 lnc-CIB1-21:3
5.2 lnc-VPS33B-6:3