Transcript: lnc-VPS54-4:3

Basic information

LNCipedia transcript ID: lnc-VPS54-4:3 
LNCipedia gene ID: lnc-VPS54-4
Location (hg19): chr2:64327532-64371496
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 698 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT071088
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.2691 non-coding 
CPAT coding probability 4.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS54-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VPS54-4:3
4.0 lnc-VPS54-4:3
4.1 lnc-VPS54-4:3
5.0 lnc-VPS54-4:3
5.1 lnc-GKN2-119:3
5.2 lnc-VPS54-4:3